Okay this has bothered me ALOT (8-12 years) I only remember like one scene when I just saw glimpse of it at my cousins place: Theres man and woman standing in a planet with a green hue and theres a landed spacehsip in the background. it had some matrix/time travel vibes in it. I have been trying to find this about 7 years. The art style was 3d animation/anime, like old game cutscene, Not drawn but pure CG.

This is all I remember :S Sorry if this is bit of a longshot but I just CANT get that scene out of my head.. its like a earworm (in this case a brainworm)

List of movies/series I checked already:
Titan AE
Ghost in the shell
animatrix